Bio::ASN1::EntrezGene

Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez Gene genome databases (www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It parses an ASN.1-formatted Entrez Gene record and returns a data structure that contains all data items from the gene record.

The parser will report error & line number if input data does not conform to the NCBI Entrez Gene genome annotation file format.

BioPerl (developer release)

The BioPerl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.

BioPerl is a collection of object-oriented Perl modules created by the BioPerl Project. It forms the basis of a large number of bioinformatics and genomics applications.

BioPerl-run

BioPerl-run contains modules that provide a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

BioPerl-run (developer release)

BioPerl-run contains modules that provide a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

BioPython

The BioPython Project is an international association of developers who are providing freely available Python tools for use in areas of computational molecular biology such as bioinformatics and genomics.

BioPython is a collection of Python packages and modules created by the BioPython Project, intended to provide the basis for building bioinformatics applications in the Python language.

BioRuby

The BioRuby Project aims to implement an integrated environment for Bioinformatics with Ruby language.

Devel::TraceUse

This module shows the modules your program loads, recursively.

An apparently simple program may load a lot of modules. That's useful, but sometimes you may wonder exactly which part of your program loads which module.

Devel::TraceUse can analyze a program to see which part used which module.

Syntax::Highlight::Perl::Improved

This module provides syntax highlighting for Perl code.

XML::DOM::XPath

XML::DOM::XPath allows you to use XML::XPath methods to query a DOM. This is often much easier than relying only on getElementsByTagName. It lets you use all of the XML::DOM methods.