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Archive for the 'Bioinformatics' Category

Monday, September 1st, 2008

Bioinformatics Career Survey 2008 results

I posted about this survey some time ago. The data is now available under a Creative Commons Attribution, Share-a-like, Non-commercial license and you can get it from here. Lets see how many different analysis/interpretations start to appear in the Bioinformatics blogosphere…

Saturday, July 19th, 2008

BOSC 2008

Today BOSC 2008 came to its end. After missing the conference for some years now, I was finally able to attend this year.

It was really great to finally meet “in person” some of the people with whom I’ve been working all of this time at BioPerl and other OBF-affiliated projects.

The conference was really good, with interesting talks about each of the projects as well as new developments being made in the Open Source Bioinformatics community. And, of course, we had lots of fun hanging around Toronto in our spare time!

Hope to see you all again next year in Stockholm!

Tuesday, July 1st, 2008

Bioinformatics Career Survey 2008

Mike from Bioinformatics Zen created a bioinformatics career survey.

The expected results should provide an interesting picture of how people is performing in the field, so if you’re into it, please take a some minutes to fill it out.

Tuesday, January 29th, 2008

Bioinformatics games

Attention researchers/coders/gamers:

Now you can generate your character to play World of Bioinformatics Quest (WoBQ) using this guide.

Wednesday, August 15th, 2007

Google, Facebook & bioinformatics?

Neil Saunders wrote a couple of interesting posts about Google and scientific data as well as the possibility of using a social networking approach for bioinformatics discovery.

Regarding the 1st topic, I wonder if Y! will someday put hands on it…

Thursday, July 19th, 2007

BOSC 2007

The Bioinformatics Open Source Conference 2007 started today in Vienna, Austria and will continue tomorrow with an interesting schedule of talks and workshops. The creation of a BOSC Software Distribution LiveCD is included too.

Thursday, June 14th, 2007

New findings challenge established views about human genome

The ENCyclopedia Of DNA Elements [ENCODE], an international research consortium organised by the National Human Genome Research Institute [NHGRI], part of the National Institutes of Health [NIH], today published the results of its exhaustive, four-year effort to build a “parts list” of all biologically functional elements in 1 percent of the human genome in the journal Nature. The analysis was led by the European Molecular Biology Laboratory’s European Bioinformatics Institute [EMBL-EBI], drawing on expertise from 35 groups from 80 organisations around the world. The project served as a pilot to test the feasibility of a full-scale initiative to produce a comprehensive catalog of all components of the human genome crucial for biological function…

EMBL Press Release: New findings challenge established views about human genome

Friday, March 16th, 2007

Bioinformatics pipes

A couple of weeks ago, I announced the launch of Yahoo! Pipes, a free service for remixing feeds and creating new data mashups. Back then, a great expectation was raised on what could be achieved by using this new tool.

Pedro Beltrao has created two pipes for combining bioinformatics-related content. Their design for now is pretty straightforward, but I’m sure that they’ll serve as a starting point for creating more complex ones. We’ll see what comes with time…

Friday, March 16th, 2007

Notes for newbies (and veterans alike)

Bosco posted a short list of important notes for novice bioinformaticists. It raised some good comments and most people agreed that its reading could be a must for people who’s pursuing a career in bioinformatics.

From my point of view, these notes are useful to any programmer, specially those who like to live in a constant mess…

Thursday, November 16th, 2006

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

This looks like a great tool for phylogenetic studies:

The Interactive Tree Of Life (iTOL) is a web based tool for the display, manipulation and annotation of phylogenetic trees. Trees can be interactively pruned and re-rooted. Various types of data such as genome sizes or protein domain repertoires can be mapped onto the tree. Export to several bitmap and vector graphics formats is supported.

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation